Smith, B. D. Documenting plant domestication: The consilience of biological and archaeological approaches. Proc. Natl Acad. Sci. USA 98, 13241326 (2001).

ADS CAS PubMed PubMed Central Article Google Scholar

Darwin, C. R. On the Origins of the Species. (John Murray, 1859).

Venable, D. L. & Lawlor, L. Delayed germination and dispersal in desert annuals: escape in space and time. Oecologia 46, 272282 (1980).

ADS PubMed Article PubMed Central Google Scholar

Ellner, S. ESS germination strategies in randomly varying environments.1. Logist.Type models Theor. Popul. Biol. 28, 5079 (1985).

MathSciNet CAS PubMed MATH Article PubMed Central Google Scholar

Levin, D. A. Seed bank as a source of genetic novelty in plants. Am. Nat. 135, 563572 (1990).

Article Google Scholar

Evans, M. E. K., Ferriere, R., Kane, M. J. & Venable, D. L. Bet hedging via seed banking in desert evening primroses (Oenothera, Onagraceae): demographic evidence from natural populations. Am. Nat. 169, 8494 (2007). Simulations and field data support bet-hedging via dormancy.

Article Google Scholar

Kortessis, N. & Chesson, P. Germination variation facilitates the evolution of seed dormancy when coupled with seedling competition. Theor. Popul. Biol. 130, 6073 (2019).

PubMed MATH Article PubMed Central Google Scholar

Peres, S. Saving the gene pool for the future: Seed banks as archives. Stud. Hist. Philos. Sci. Part C. Stud. Hist. Philos. Biol. Biomed. Sci. 55, 96104 (2016).

Article Google Scholar

Tocheva, E. I., Ortega, D. R. & Jensen, G. J. Sporulation, bacterial cell envelopes and the origin of life. Nat. Rev. Microbiol. 14, 535542 (2016).

PubMed PubMed Central Article Google Scholar

Ginsburg, I., Lingam, M. & Loeb, A. Galactic Panspermia. Astrophys. J. Lett. 868 (2018).

Maslov, S. & Sneppen, K. Well-temperate phage: optimal bet-hedging against local environmental collapses. Sci. Rep. 5, 10523 (2015).

ADS CAS PubMed PubMed Central Article Google Scholar

Lennon, J. T. & Jones, S. E. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat. Rev. Microbiol. 9, 119130 (2011).

CAS PubMed Article PubMed Central Google Scholar

Sriram, R., Shoff, M., Booton, G., Fuerst, P. & Visvesvara, G. S. Survival of Acanthamoeba cysts after desiccation for more than 20 years. J. Clin. Microbiol. 46, 40454048 (2008).

PubMed PubMed Central Article Google Scholar

Storey, K. B. Life in the slow lane: molecular mechanisms of estivation. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 133, 733754 (2002).

PubMed Article PubMed Central Google Scholar

Hu, P. J. In WormBook (ed The C. elegans Research Community) (2007).

Gilbert, J. J. Dormancy in rotifers. Trans. Am. Microsc. Soc. 93, 490513 (1974).

Article Google Scholar

Kostal, V. Eco-physiological phases of insect diapause. J. Insect Physiol. 52, 113127 (2006).

CAS PubMed Article PubMed Central Google Scholar

Schleucher, E. Torpor in birds: taxonomy, energetics, and ecology. Physiol. Biochem. Zool. 77, 942949 (2004).

PubMed Article PubMed Central Google Scholar

Cooke, S. J., Grant, E. C., Schreer, J. F., Philipp, D. P. & Devries, A. L. Low temperature cardiac response to exhaustive exercise in fish with different levels of winter quiescence. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 134, 159167 (2003).

Article Google Scholar

Fenelon, J. C., Banerjee, A. & Murphy, B. D. Embryonic diapause: development on hold. Int. J. Dev. Biol. 58, 163174 (2014).

PubMed Article PubMed Central Google Scholar

Andrews, M. T. Advances in molecular biology of hibernation in mammals. Bioessays 29, 431440 (2007).

CAS PubMed Article PubMed Central Google Scholar

Sottocornola, R. & Lo Celso, C. Dormancy in the stem cell niche. Stem Cell Res. Ther. 3, 10 (2012).

Phan, T. G. & Croucher, P. I. The dormant cancer cell life cycle. Nat. Rev. Cancer 20, 398411 (2020). Review discussing importance of dormancy for persistence and dispersal of cancer cells with clinical applications.

CAS PubMed Article PubMed Central Google Scholar

Darby, I. A. & Hewitson, T. D. Fibroblast differentiation in wound healing and fibrosis. Int Rev. Cytol. 257, 143179 (2007).

CAS PubMed Article PubMed Central Google Scholar

Chapman, N. M., Boothby, M. R. & Chi, H. B. Metabolic coordination of T cell quiescence and activation. Nat. Rev. Immunol. 20, 5570 (2020).

CAS PubMed Article PubMed Central Google Scholar

Shoham, S., OConnor, D. H. & Segev, R. How silent is the brain: is there a dark matter problem in neuroscience? J. Comp. Physiol. A Neuroethol. Sens. Neural Behav. Physiol. 192, 777784 (2006).

PubMed Article PubMed Central Google Scholar

Takahashi, T. M. et al. A discrete neuronal circuit induces a hibernation-like state in rodents. Nature 583, 109-114 (2020).

Seger, J. & Brockmann, J. H. What is bet-hedging? In Oxford Surveys in Evolutionary Biology (eds Harvey P. H. & Partridge L.) Vol. 4, 182211 (Oxford University Press, 1987). Comprehensive review of bet-hedging in population biology.

Considine, M. J. & Considine, J. A. On the language and physiology of dormancy and quiescence in plants. J. Exp. Bot. 67, 31893203 (2016).

CAS PubMed Article PubMed Central Google Scholar

Cohen, D. Optimizing reproduction in a randomly varying environment. Theor. Biol. 12, 119129 (1966). Among the first mathematical models describing the benefits of delayed seed germination.

ADS CAS Article Google Scholar

Amen, R. D. A model of seed dormancy. Bot. Rev. 34, 131 (1968).

CAS Article Google Scholar

Bulmer, M. G. Delayed germination of seeds: Cohens model revisited. Theor. Popul. Biol. 26, 367377 (1984).

MathSciNet MATH Article Google Scholar

Philippi, T. Bet-hedging germination of desert annuals: beyond the 1st year. Am. Nat. 142, 474487 (1993).

CAS PubMed Article Google Scholar

Rajon, E., Venner, S. & Menu, F. Spatially heterogeneous stochasticity and the adaptive diversification of dormancy. J. Evol. Biol. 22, 20942103 (2009).

CAS PubMed Article Google Scholar

Blath, J., Gonzlez Casanova, A., Eldon, B., Kurt, N. & Wilke-Berenguer, M. Genetic variability under the seedbank coalescent. Genetics 200, 921934 (2015).

PubMed PubMed Central Article Google Scholar

Locey, K. J., Fisk, M. C. & Lennon, J. T. Microscale insight into microbial seed banks. Front. Microbiol. 7, 2040 (2017).

PubMed PubMed Central Article Google Scholar

Yamamichi, M., Hairston, N. G., Rees, M. & Ellner, S. P. Rapid evolution with generation overlap: the double-edged effect of dormancy. Theor. Ecol. 12, 179195 (2019). Models explore how dormancy and environmental fluctuations affect the rate of trait evolution and adaptation.

Article Google Scholar

Wrmer, L. et al. Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial. Sci. Adv. 5, eaav1024 (2019).

ADS PubMed PubMed Central Article CAS Google Scholar

Baskin, C. C. & Baskin, J. Seeds: Ecology, Biogeography, and, Evolution of Dormancy and Germination. 1600 (Academic Press, 2014). Comprehensive book covering the causes and consequences of dormancy in plants.

Magurran, A. E. Measuring Biological Diversity. (Blackwell Publishing, 2004).

Hoyle, G. L. et al. Soil warming increases plant species richness but decreases germination from the alpine soil seed bank. Glob. Change Biol. 19, 15491561 (2013).

ADS Article Google Scholar

Haaland, T. R., Wright, J. & Ratikainen, I. I. Bet-hedging across generations can affect the evolution of variance-sensitive strategies within generations. Proc. R. Soc. B Biol. Sci. 286, 20192070 (2019).

Article Google Scholar

Childs, D. Z., Metcalf, C. J. E. & Rees, M. Evolutionary bet-hedging in the real world: empirical evidence and challenges revealed by plants. Proc. R. Soc. B Biol. Sci. 277, 30553064 (2010).

Article Google Scholar

Starrfelt, J. & Kokko, H. Bet-hedging - a triple trade-off between means, variances and correlations. Biol. Rev. 87, 742755 (2012).

PubMed Article PubMed Central Google Scholar

Cooper, W. S. & Kaplan, R. H. Adaptive coin-flipping: a decision-theoretic examination of natural selection for random individual variation. J. Theor. Biol. 94, 135151 (1982).

ADS MathSciNet CAS PubMed Article PubMed Central Google Scholar

Kussell, E. & Leibler, S. Phenotypic diversity, population growth, and information in fluctuating environments. Science 309, 20752078 (2005).

ADS CAS PubMed Article PubMed Central Google Scholar

Kussell, E., Kishony, R., Balaban, N. Q. & Leibler, S. Bacterial persistence: a model of survival in changing environments. Genetics 169, 18071814 (2005). Model showing that stochastic transitioning into dormancy is beneficial in fluctuating environments.

PubMed PubMed Central Article Google Scholar

Beaumont, H. J. E., Gallie, J., Kost, C., Ferguson, G. C. & Rainey, P. B. Experimental evolution of bet hedging. Nature 462, 9093 (2009).

ADS CAS PubMed Article PubMed Central Google Scholar

Jost, J. & Wang, Y. Optimization and phenotype allocation. Bull. Math. Biol. 76, 184200 (2014).

MathSciNet PubMed MATH Article PubMed Central Google Scholar

Lewis, K. Persister cells. Annu. Rev. Microbiol. 64, 357372 (2010).

CAS PubMed Article PubMed Central Google Scholar

Epstein, S. S. Microbial awakenings. Nature 457, 10831083 (2009).

ADS CAS PubMed Article PubMed Central Google Scholar

Buerger, S. et al. Microbial scout hypothesis, stochastic exit from dormancy, and the nature of slow growers. Appl. Environ. Microbiol. 78, 32213228 (2012).

ADS CAS PubMed PubMed Central Article Google Scholar

Chevin, L. M. & Hoffman, A. A. Evolution of phenotypic plasticity in extreme environments. Philos. Trans. R. Soc. Lond. 372, 1723 (2017).

Article Google Scholar

Govern, C. C. & ten Wolde, P. R. Optimal resource allocation in cellular sensing systems. Proc. Natl Acad. Sci. USA 111, 1748617491 (2014).

ADS CAS PubMed PubMed Central Article Google Scholar

Read the original post:

Principles of seed banks and the emergence of complexity from dormancy - Nature.com

Related Post

Leave a comment

Your email address will not be published. Required fields are marked *


Refresh